ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e8zy5C1 - ECOD Domain | ECOD

ECOD/Domains/e8zy5C1

e8zy5C1

UID: 005248815

PDB

Range: C:96-296,C:436-438,C:558-559,C:597-601,C:617-617,C:644-654,C:730-738,C:749-750,C:761-768,C:842-845
PDB: 8ZY5 chain C(all domains)

Molecule: Spike glycoprotein

3D Structure

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Related Domains

Browse other domains in bCoV_S1_N →

Classification

AArchitecturebeta sandwiches(a.3)

XX-groupjelly-roll(10)

HH-groupConcanavalin A-like(10.1)

TT-groupConcanavalin A-like lectins/glucanases(10.1.1)

FFamilybCoV_S1_N(10.1.1.39)

Ligands

in contact, ≤ 4 Å

2-acetamido-2-deoxy-beta-D-glucopyranoseNAG

Shown in the structure viewer.

Pfam Families

PF16451bCoV_S1_N

Betacoronavirus-like spike glycoprotein S1, N-terminal

ClanCL0004Concanavalin

External Links

ECOD PDB View: 8ZY5 RCSB PDB: 8ZY5 PDBe: 8ZY5

Downloads

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