ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e9b2iC1 - ECOD Domain | ECOD

ECOD/Domains/e9b2iC1

e9b2iC1

UID: 005252031

PDB

Range: C:1-297
PDB: 9B2I chain C(all domains)

Molecule: quorum-quenching N-acyl-homoserine lactonase

3D Structure

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Related Domains

Browse other domains in Lactamase_B →

Classification

AArchitecturea+b four layers(a.13)

XX-groupMetallo-hydrolase/oxidoreductase(247)

HH-groupMetallo-hydrolase/oxidoreductase(247.1)

TT-groupMetallo-hydrolase/oxidoreductase(247.1.1)

FFamilyLactamase_B(247.1.1.1)

Ligands

in contact, ≤ 4 Å

COBALT (II) IONCO
metal
FE (III) IONFE
metal

+ 5 additives (Acetate ion, 1,2-ETHANEDIOL, Glycerol, …)

Acetate ionACT
1,2-ETHANEDIOLEDO
Glycerol

Pfam Families

PF00753Lactamase_B

Metallo-beta-lactamase superfamily

ClanCL0381Metallo-HOrase

External Links

ECOD PDB View: 9B2I RCSB PDB: 9B2I PDBe: 9B2I

Downloads

Download Domain PDB Full PDB Structure

Triethylene glycolPGE

Sulfate ionSO4

Shown in the structure viewer.