ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e9c6zA1 - ECOD Domain | ECOD

ECOD/Domains/e9c6zA1

e9c6zA1

UID: 005260886

PDB

Range: A:93-196
PDB: 9C6Z chain A(all domains)
UniProt: A8E1U5 (all domains)
Gene: sl11

Molecule: Superantigen-like protein 11

3D Structure

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Related Domains

Browse other domains in Stap_Strp_tox_C →

Classification

AArchitecturea+b two layers(a.11)

XX-groupbeta-Grasp(221)

HH-groupUbiquitin-related(221.1)

TT-groupUbiquitin-like(221.1.1)

FFamilyStap_Strp_tox_C(221.1.1.17)

Ligands

in contact, ≤ 4 Å

(4aR,5S,6S,8R,8aS)-6-(hydroxymethyl)-8-methoxy-2,2-dimethylhexahydro-2H-pyrano[3,4-d][1,3]dioxin-5-olA1AU2
N-acetyl-alpha-neuraminic acidSIA
Zinc ionZN
metal

+ 2 additives (Pentaethylene glycol, Sulfate ion)

Pentaethylene glycol1PE
Sulfate ion

Pfam Families

PF02876Stap_Strp_tox_C

Staphylococcal/Streptococcal toxin, beta-grasp domain

ClanCL0072Ubiquitin

External Links

ECOD PDB View: 9C6Z RCSB PDB: 9C6Z PDBe: 9C6Z UniProt: A8E1U5

Downloads

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