ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e9cbfA2 - ECOD Domain | ECOD

ECOD/Domains/e9cbfA2

e9cbfA2

UID: 005261785

PDB

Range: A:1-366
PDB: 9CBF chain A(all domains)
UniProt: F1QCV2 (all domains)
Gene: hdac10

Molecule: Polyamine deacetylase HDAC10

3D Structure

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Related Domains

Browse other domains in Hist_deacetyl →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupHAD domain-like(2006)

HH-groupHAD domain-related(2006.1)

TT-groupArginase/deacetylase(2006.1.5)

FFamilyHist_deacetyl(2006.1.5.2)

Ligands

in contact, ≤ 4 Å

1-[3-(aminomethyl)phenyl]-2-sulfanylethan-1-oneA1AVR
Potassium ionK
metal
Zinc ionZN
metal

+ 2 additives (1,2-ETHANEDIOL, Phosphate ion)

1,2-ETHANEDIOLEDO

Pfam Families

PF00850Hist_deacetyl

Histone deacetylase domain

ClanCL0302Arginase

External Links

ECOD PDB View: 9CBF RCSB PDB: 9CBF PDBe: 9CBF UniProt: F1QCV2

Downloads

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Phosphate ion

Shown in the structure viewer.