ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e9dm1L1 - ECOD Domain | ECOD

ECOD/Domains/e9dm1L1

e9dm1L1

UID: 005270637

PDB

Range: L:1-552
PDB: 9DM1 chain L(all domains)

Molecule: Cytochrome c oxidase subunit 1

3D Structure

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Related Domains

Browse other domains in COX1 →

Classification

AArchitecturealpha superhelices(a.9)

XX-groupCytochrome c oxidase subunit I-like(5038)

HH-groupCytochrome c oxidase subunit I-like(5038.1)

TT-groupCytochrome c oxidase subunit I-like(5038.1.1)

FFamilyCOX1(5038.1.1.1)

Ligands

in contact, ≤ 4 Å

(2S)-1-(hexadecanoyloxy)propan-2-yl (10S)-10-methyloctadecanoate9XX
(2R)-3-(((2-aminoethoxy)(hydroxy)phosphoryl)oxy)-2-(palmitoyloxy)propyl (E)-octadec-9-enoate9Y0
(2R)-2-(hexadecanoyloxy)-3-{[(S)-hydroxy{[(1R,2R,3R,4R,5R,6S)-2,3,4,5,6-pentahydroxycyclohexyl]oxy}phosphoryl]oxy}propyl (9S)-9-methyloctadecanoate9YF
CardiolipinCDL
COPPER (II) IONCU

Pfam Families

Cytochrome C and Quinol oxidase polypeptide I

ClanCL0714COX1-like

External Links

ECOD PDB View: 9DM1 RCSB PDB: 9DM1 PDBe: 9DM1

Downloads

Download Domain PDB Full PDB Structure

metal

Heme-aHEA

MENAQUINONE-9MQ9

Palmitic acidPLM

Shown in the structure viewer.