ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e9dy7C1 - ECOD Domain | ECOD

ECOD/Domains/e9dy7C1

e9dy7C1

UID: 005272385

PDB

Range: C:1-320
PDB: 9DY7 chain C(all domains)

Molecule: Tryptophanase (with internal aldimine)

3D Structure

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Related Domains

Browse other domains in Beta_elim_lyase →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupPLP-dependent transferases(7577)

HH-groupPLP-dependent transferases(7577.1)

TT-groupPLP-dependent transferases(7577.1.1)

FFamilyBeta_elim_lyase(7577.1.1.8)

Ligands

in contact, ≤ 4 Å

2-AMINO-4-ETHYL SULFANYL BUTYRIC ACIDESC
Sodium ionNA
metal
(E)-S-ethyl-N-({3-hydroxy-2-methyl-5-[(phosphonooxy)methyl]pyridin-4-yl}methylidene)-L-homocysteineYAE

+ 1 additive (Dimethyl sulfoxide)

Dimethyl sulfoxideDMS

Shown in the structure viewer.

Pfam Families

PF01212Beta_elim_lyase

Beta-eliminating lyase

ClanCL0061PLP_aminotran

External Links

ECOD PDB View: 9DY7 RCSB PDB: 9DY7 PDBe: 9DY7

Downloads

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