ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e9emvA1 - ECOD Domain | ECOD

ECOD/Domains/e9emvA1

e9emvA1

UID: 005277159

PDB

Range: A:1-301
PDB: 9EMV chain A(all domains)

Molecule: 2'-O-methyltransferase nsp16

3D Structure

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Related Domains

Browse other domains in CoV_Methyltr_2 →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupRossmann-like(2003)

HH-groupRossmann-related(2003.1)

TT-groupS-adenosyl-L-methionine-dependent methyltransferases(2003.1.5)

FFamilyCoV_Methyltr_2(2003.1.5.56)

Ligands

in contact, ≤ 4 Å

P1-7-METHYLGUANOSINE-P3-ADENOSINE-5',5'-TRIPHOSPHATEGTA
S-adenosyl-l-homocysteineSAH
SangivamycinSGV
7-METHYL-GUANOSINE-5'-TRIPHOSPHATE-5'-(2'-O-METHYL)-ADENOSINEV9G

+ 2 additives (1,2-ETHANEDIOL, 2-(N-MORPHOLINO)-ETHANESULFONIC ACID)

1,2-ETHANEDIOLEDO

Pfam Families

PF06460CoV_Methyltr_2

Coronavirus 2'-O-methyltransferase

ClanCL0063NADP_Rossmann

External Links

ECOD PDB View: 9EMV RCSB PDB: 9EMV PDBe: 9EMV

Downloads

Download Domain PDB Full PDB Structure

2-(N-MORPHOLINO)-ETHANESULFONIC ACIDMES

Shown in the structure viewer.