ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e9gkyB1 - ECOD Domain | ECOD

ECOD/Domains/e9gkyB1

e9gkyB1

UID: 005292120

PDB

Range: B:1-294
PDB: 9GKY chain B(all domains)

Molecule: Histone deacetylase

3D Structure

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Related Domains

Browse other domains in Hist_deacetyl →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupHAD domain-like(2006)

HH-groupHAD domain-related(2006.1)

TT-groupArginase/deacetylase(2006.1.5)

FFamilyHist_deacetyl(2006.1.5.2)

Ligands

in contact, ≤ 4 Å

Decanoic acidDKA
Potassium ionK
metal
Sodium ionNA
metal
Zinc ionZN
metal

+ 1 additive (Imidazole)

Pfam Families

PF00850Hist_deacetyl

Histone deacetylase domain

ClanCL0302Arginase

External Links

ECOD PDB View: 9GKY RCSB PDB: 9GKY PDBe: 9GKY

Downloads

Download Domain PDB Full PDB Structure

ImidazoleIMD

Shown in the structure viewer.