ECODEvolutionary Classification of Protein Domains

Home Browse Search Download Help

About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

Quick Links

Browse Classification
Search
Download Data
Documentation
Privacy

Resources

Grishin Lab
UT Southwestern
RCSB PDB
AlphaFold DB
ecod.database@gmail.com

© 2014-2026 Grishin Lab / HHMI / UTSW

e9ikfA1 - ECOD Domain | ECOD

ECOD/Domains/e9ikfA1

e9ikfA1

UID: 005299597

PDB

Range: A:1-514
PDB: 9IKF chain A(all domains)
UniProt: P00396 (all domains)
Gene: MT-CO1

Molecule: Cytochrome c oxidase subunit 1

3D Structure

Loading viewer...

Related Domains

Browse other domains in this classification →

Classification

AArchitecture—

XX-group—

HH-group—

TT-group—

FFamily—

Ligands

in contact, ≤ 4 Å

CardiolipinCDL
Cholic acidCHD
Carbon dioxideCO2
COPPER (II) IONCU
metal
Decyl-beta-d-maltopyranosideDMU
Heme-a

External Links

ECOD PDB View: 9IKF RCSB PDB: 9IKF PDBe: 9IKF UniProt: P00396

Downloads

Download Domain PDB Full PDB Structure

EicosaneLFA

Magnesium ionMG

metal

Sodium ionNA

metal

(1S)-2-{[(2-AMINOETHOXY)(HYDROXY)PHOSPHORYL]OXY}-1-[(STEAROYLOXY)METHYL]ETHYL (5E,8E,11E,14E)-ICOSA-5,8,11,14-TETRAENOATEPEK

Peroxide ionPER

(1R)-2-{[{[(2S)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL (11E)-OCTADEC-11-ENOATEPGV

+ 1 additive (1,2-ETHANEDIOL)

1,2-ETHANEDIOLEDO

Shown in the structure viewer.