ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e9in8A1 - ECOD Domain | ECOD

ECOD/Domains/e9in8A1

e9in8A1

UID: 005299867

PDB

Range: A:2-225
PDB: 9IN8 chain A(all domains)
UniProt: F2Y337 (all domains)

Molecule: Viral rhodopsin OLPVR1

3D Structure

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Related Domains

Browse other domains in Bac_rhodopsin →

Classification

AArchitecturealpha bundles(a.7)

XX-groupFamily A G protein-coupled receptor-like(5001)

HH-groupFamily A G protein-coupled receptor-like(5001.1)

TT-groupFamily A G protein-coupled receptor-like(5001.1.1)

FFamilyBac_rhodopsin(5001.1.1.6)

Ligands

in contact, ≤ 4 Å

(2S)-2,3-dihydroxypropyl (9Z)-hexadec-9-enoate97N
EicosaneLFA
Sodium ionNA
metal
(2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoateOLC
RetinalRET

+ 1 additive (Glycerol)

Pfam Families

PF01036Bac_rhodopsin

Bacteriorhodopsin-like protein

ClanCL0192GPCR_A

External Links

ECOD PDB View: 9IN8 RCSB PDB: 9IN8 PDBe: 9IN8 UniProt: F2Y337

Downloads

Download Domain PDB Full PDB Structure

GlycerolGOL

Shown in the structure viewer.