ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e9jowD1 - ECOD Domain | ECOD

ECOD/Domains/e9jowD1

e9jowD1

UID: 005303560

PDB

Range: D:9-271
PDB: 9JOW chain D(all domains)
UniProt: W8VZW3 (all domains)
Gene: ClR

Molecule: Chloride pumping rhodopsin

3D Structure

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Related Domains

Browse other domains in Bac_rhodopsin →

Classification

AArchitecturealpha bundles(a.7)

XX-groupFamily A G protein-coupled receptor-like(5001)

HH-groupFamily A G protein-coupled receptor-like(5001.1)

TT-groupFamily A G protein-coupled receptor-like(5001.1.1)

FFamilyBac_rhodopsin(5001.1.1.6)

Ligands

in contact, ≤ 4 Å

(3~{S},4~{Z},6~{E},8~{Z},10~{E},12~{E},14~{E},16~{E},18~{E},20~{E},22~{E},24~{E})-2,6,10,14,19,23-hexamethyl-25-[(4~{R})-2,6,6-trimethyl-4-oxidanyl-cyclohexen-1-yl]pentacosa-4,6,8,10,12,14,16,18,20,22,24-undecaene-2,3-diolA1L4O
Chloride ionCL
DodecaneD12
1,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINEPC1
Diundecyl phosphatidyl cholinePLC

Pfam Families

PF01036Bac_rhodopsin

Bacteriorhodopsin-like protein

ClanCL0192GPCR_A

External Links

ECOD PDB View: 9JOW RCSB PDB: 9JOW PDBe: 9JOW UniProt: W8VZW3

Downloads

Download Domain PDB Full PDB Structure

HexadecaneR16

RetinalRET

Shown in the structure viewer.