ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e9ku6A1 - ECOD Domain | ECOD

ECOD/Domains/e9ku6A1

e9ku6A1

UID: 005305980

PDB

Range: A:1-595
PDB: 9KU6 chain A(all domains)
UniProt: P80025 (all domains)
Gene: LPO

Molecule: Lactoperoxidase

3D Structure

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Related Domains

Browse other domains in An_peroxidase →

Classification

AArchitecturealpha complex topology(a.10)

XX-groupHeme-dependent peroxidases(136)

HH-groupHeme-dependent peroxidases(136.1)

TT-groupHeme-dependent peroxidases(136.1.1)

FFamilyAn_peroxidase(136.1.1.3)

Ligands

in contact, ≤ 4 Å

Calcium ionCA
metal
Protoporphyrin ix containing feHEM
Iodide ionIOD
2-acetamido-2-deoxy-beta-D-glucopyranoseNAG
Nitric oxideNO
Nitrite ion

Pfam Families

PF03098An_peroxidase

Animal haem peroxidase

ClanCL0617Peroxidase

External Links

ECOD PDB View: 9KU6 RCSB PDB: 9KU6 PDBe: 9KU6 UniProt: P80025

Downloads

Download Domain PDB Full PDB Structure

Thiocyanate ionSCN

+ 1 additive (Triethylene glycol)

Triethylene glycolPGE

Shown in the structure viewer.