ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e9le8AJ1 - ECOD Domain | ECOD

ECOD/Domains/e9le8AJ1

e9le8AJ1

UID: 005306923

PDB

Range: AJ:10-335
PDB: 9LE8 chain AJ(all domains)

Molecule: Photosystem II protein D1

3D Structure

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Related Domains

Browse other domains in Photo_RC →

Classification

AArchitecturealpha bundles(a.7)

XX-groupBacterial photosystem II reaction centre L and M subunits-like(5037)

HH-groupBacterial photosystem II reaction centre L and M subunits-like(5037.1)

TT-groupBacterial photosystem II reaction centre L and M subunits-like(5037.1.1)

FFamilyPhoto_RC(5037.1.1.1)

Ligands

in contact, ≤ 4 Å

Beta-caroteneBCR
Chlorophyll aCLA
DIGALACTOSYL DIACYL GLYCEROL (DGDG)DGD
FE (II) IONFE2
metal
1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLELHG
1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE

Pfam Families

PF00124Photo_RC

Photosynthetic reaction centre protein

External Links

ECOD PDB View: 9LE8 RCSB PDB: 9LE8 PDBe: 9LE8

Downloads

Download Domain PDB Full PDB Structure

CA-MN4-O5 CLUSTEROEX

Pheophytin aPHO

1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROLSQD

+ 1 additive (Bicarbonate ion)

Bicarbonate ionBCT

Shown in the structure viewer.