ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e9qdiE1 - ECOD Domain | ECOD

ECOD/Domains/e9qdiE1

e9qdiE1

UID: 005324410

PDB

Range: E:141-409
PDB: 9QDI chain E(all domains)
UniProt: Q5L9L3 (all domains)
Gene: BF9343_3433

Molecule: Lipoprotein

3D Structure

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Related Domains

Browse other domains in Peptidase_M64 →

Classification

AArchitecturemixed a+b and a/b(a.18)

XX-groupZincin-like(2498)

HH-groupMetalloproteases ("zincins") catalytic domain(2498.1)

TT-groupMetalloproteases ("zincins") catalytic domain(2498.1.1)

FFamilyPeptidase_M64(2498.1.1.37)

Ligands

in contact, ≤ 4 Å

Potassium ionK
metal
N-propanolPOL
Zinc ionZN
metal

+ 2 additives (1,4-BUTANEDIOL, 1,2-ETHANEDIOL)

1,4-BUTANEDIOLBU1
1,2-ETHANEDIOL

Pfam Families

PF09471Peptidase_M64

IgA Peptidase M64

ClanCL0126Peptidase_MA

External Links

ECOD PDB View: 9QDI RCSB PDB: 9QDI PDBe: 9QDI UniProt: Q5L9L3

Downloads

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