ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e9qefL1 - ECOD Domain | ECOD

ECOD/Domains/e9qefL1

e9qefL1

UID: 005324477

PDB

Range: L:34-561
PDB: 9QEF chain L(all domains)
UniProt: A0A0D6HTJ9 (all domains)

Molecule: Cytochrome c oxidase subunit 1

3D Structure

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Related Domains

Browse other domains in COX1 →

Classification

AArchitecturealpha superhelices(a.9)

XX-groupCytochrome c oxidase subunit I-like(5038)

HH-groupCytochrome c oxidase subunit I-like(5038.1)

TT-groupCytochrome c oxidase subunit I-like(5038.1.1)

FFamilyCOX1(5038.1.1.1)

Ligands

in contact, ≤ 4 Å

(2S)-1-(hexadecanoyloxy)propan-2-yl (10S)-10-methyloctadecanoate9XX
(2R)-2-(hexadecanoyloxy)-3-{[(S)-hydroxy{[(1R,2R,3R,4R,5R,6S)-2,3,4,5,6-pentahydroxycyclohexyl]oxy}phosphoryl]oxy}propyl (9S)-9-methyloctadecanoate9YF
Calcium ionCA
metal
CardiolipinCDL
COPPER (II) IONCU

Pfam Families

Cytochrome C and Quinol oxidase polypeptide I

ClanCL0714COX1-like

External Links

ECOD PDB View: 9QEF RCSB PDB: 9QEF PDBe: 9QEF UniProt: A0A0D6HTJ9

Downloads

Download Domain PDB Full PDB Structure

metal

Heme-aHEA

Magnesium ionMG

metal

MENAQUINONE-9MQ9

Palmitic acidPLM

TridecaneTRD

acyl-phosphatidyl-myo-inositol dimannoside (AcPIM2)WUO

Shown in the structure viewer.