ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e9vdxM1 - ECOD Domain | ECOD

ECOD/Domains/e9vdxM1

e9vdxM1

UID: 005331418

PDB

Range: M:1-301
PDB: 9VDX chain M(all domains)
UniProt: P06010 (all domains)
Gene: pufM

Molecule: Reaction center protein M chain

3D Structure

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Related Domains

Browse other domains in this classification →

Classification

AArchitecture—

XX-group—

HH-group—

TT-group—

FFamily—

Ligands

in contact, ≤ 4 Å

Bacteriochlorophyll bBCB
Bacteriopheophytin bBPB
FE (II) IONFE2
metal
Heme cHEC
HEPTANE-1,2,3-TRIOLHTO
MENAQUINONE-7

External Links

ECOD PDB View: 9VDX RCSB PDB: 9VDX PDBe: 9VDX UniProt: P06010

Downloads

Download Domain PDB Full PDB Structure

15-cis-1,2-dihydroneurosporeneNS5

+ 2 additives (Lauryl dimethylamine-n-oxide, Sulfate ion)

Lauryl dimethylamine-n-oxideLDA
Sulfate ionSO4

Shown in the structure viewer.