ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e11jdB2 - ECOD Domain | ECOD

ECOD/Domains/e11jdB2

e11jdB2

UID: 005336150

PDB

Range: B:520-659
PDB: 11JD chain B(all domains)

Molecule: Major vault protein

3D Structure

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Related Domains

Browse other domains in MVP_shoulder →

Classification

AArchitecturea+b two layers(a.11)

XX-groupT-fold(230)

HH-groupBand 7/SPFH domain(230.5)

TT-groupBand 7/SPFH domain(230.5.1)

FFamilyMVP_shoulder(230.5.1.2)

Ligands

in contact, ≤ 4 Å

[(2R,3S,4R,5R)-5-(6-AMINOPURIN-9-YL)-3,4-DIHYDROXY-OXOLAN-2-YL]METHYL[HYDROXY-[[(2R,3S,4R,5S)-3,4,5-TRIHYDROXYOXOLAN-2-YL]METHOXY]PHOSPHORYL] HYDROGEN PHOSPHATEAR6

Shown in the structure viewer.

Pfam Families

PF11978MVP_shoulder

Shoulder domain

ClanCL0433SPFH

External Links

ECOD PDB View: 11JD RCSB PDB: 11JD PDBe: 11JD

Downloads

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