ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e9nugB1 - ECOD Domain | ECOD

ECOD/Domains/e9nugB1

e9nugB1

UID: 005337248

PDB

Range: B:36-357
PDB: 9NUG chain B(all domains)

Molecule: D-ornithine/D-lysine decarboxylase

3D Structure

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Related Domains

Browse other domains in Orn_Arg_deC_N →

Classification

AArchitecturea/b barrels(a.16)

XX-groupTIM beta/alpha-barrel(2002)

HH-groupTIM barrels(2002.1)

TT-groupTIM barrels(2002.1.1)

FFamilyOrn_Arg_deC_N(2002.1.1.101)

Ligands

in contact, ≤ 4 Å

(E)-N~2~-({3-hydroxy-2-methyl-5-[(phosphonooxy)methyl]pyridin-4-yl}methylidene)-D-arginine5DK
[(4R)-4-{(E)-[(4-carbamimidamidobutyl)imino]methyl}-6-methyl-5-oxo-4,5-dihydropyridin-3-yl]methyl dihydrogen phosphateA1B68
Chloride ionCL
Potassium ionK
metal

+ 1 additive (Dimethyl sulfoxide)

Pfam Families

PF02784Orn_Arg_deC_N

Pyridoxal-dependent decarboxylase, pyridoxal binding domain

ClanCL0036TIM_barrel

External Links

ECOD PDB View: 9NUG RCSB PDB: 9NUG PDBe: 9NUG

Downloads

Download Domain PDB Full PDB Structure

Dimethyl sulfoxide

Shown in the structure viewer.