ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e25iiA1 - ECOD Domain | ECOD

ECOD/Domains/e25iiA1

e25iiA1

UID: 005338580

PDB

Range: A:11-1669
PDB: 25II chain A(all domains)

Molecule: Sodium channel protein type 8 subunit alpha

3D Structure

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Related Domains

Browse other domains in Ion_trans+Na_trans_assoc →

Classification

AArchitecturealpha complex topology(a.10)

XX-groupVoltage-gated ion channels(5054)

HH-groupVoltage-gated ion channels(5054.1)

TT-groupVoltage-gated ion channels(5054.1.1)

FFamilyIon_trans+Na_trans_assoc(5054.1.1.29)

Ligands

in contact, ≤ 4 Å

(3beta,14beta,17beta,25R)-3-[4-methoxy-3-(methoxymethyl)butoxy]spirost-5-en9Z9
CholesterolCLR
1-O-OCTADECYL-SN-GLYCERO-3-PHOSPHOCHOLINELPE
Sodium ionNA
metal
2-acetamido-2-deoxy-beta-D-glucopyranoseNAG

Pfam Families

PF00520Ion_trans

Ion transport protein

ClanCL0030Ion_channel

PF06512Na_trans_assoc

Sodium ion transport-associated

External Links

ECOD PDB View: 25II RCSB PDB: 25II PDBe: 25II

Downloads

Download Domain PDB Full PDB Structure

(5E,17R,20S)-23-amino-20-hydroxy-14,20-dioxo-15,19,21-trioxa-20lambda~5~-phosphatricos-5-en-17-yl hexadecanoateP3X

O-[(R)-{[(2R)-2,3-bis(octadecanoyloxy)propyl]oxy}(hydroxy)phosphoryl]-L-serineP5S

1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOCHOLINEPCW

Cholesterol hemisuccinateY01

Shown in the structure viewer.