ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e28pqB2 - ECOD Domain | ECOD

ECOD/Domains/e28pqB2

e28pqB2

UID: 005338863

PDB

Range: B:235-750
PDB: 28PQ chain B(all domains)

Molecule: Nitric oxide reductase subunit B

3D Structure

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Related Domains

Browse other domains in COX1 →

Classification

AArchitecturealpha superhelices(a.9)

XX-groupCytochrome c oxidase subunit I-like(5038)

HH-groupCytochrome c oxidase subunit I-like(5038.1)

TT-groupCytochrome c oxidase subunit I-like(5038.1.1)

FFamilyCOX1(5038.1.1.1)

Ligands

in contact, ≤ 4 Å

Calcium ionCA
metal
FE (III) IONFE
metal
Protoporphyrin ix containing feHEM
2,3-DIMETHOXY-5-METHYL-6-(3,11,15,19-TETRAMETHYL-EICOSA-2,6,10,14,18-PENTAENYL)-[1,4]BENZOQUINONEUQ5

+ 1 additive (Dodecyl-beta-d-maltoside)

Pfam Families

Cytochrome C and Quinol oxidase polypeptide I

ClanCL0714COX1-like

External Links

ECOD PDB View: 28PQ RCSB PDB: 28PQ PDBe: 28PQ

Downloads

Download Domain PDB Full PDB Structure

Dodecyl-beta-d-maltosideLMT

Shown in the structure viewer.