ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e8rqzC2 - ECOD Domain | ECOD

ECOD/Domains/e8rqzC2

e8rqzC2

UID: 005342874

PDB

Range: C:88-302,949-978
PDB: 8RQZ chain C(all domains)

Molecule: Probable oxidoreductase YjgC

3D Structure

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Related Domains

Browse other domains in NADH-G_4Fe-4S_3 →

Classification

AArchitecturea+b two layers(a.11)

XX-group4Fe-4S ferredoxin(205)

HH-group4Fe-4S ferredoxin(205.1)

TT-group4Fe-4S ferredoxin(205.1.1)

FFamilyNADH-G_4Fe-4S_3(205.1.1.127)

Ligands

in contact, ≤ 4 Å

1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLELHG
2-AMINO-5,6-DIMERCAPTO-7-METHYL-3,7,8A,9-TETRAHYDRO-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-4-ONE GUANOSINE DINUCLEOTIDEMGD
MENAQUINONE-7MQ7
Myristic acidMYR
Iron/sulfur clusterSF4

+ 2 additives (Glycerol, Malonate ion)

Pfam Families

PF10588NADH-G_4Fe-4S_3

NADH-ubiquinone oxidoreductase-G iron-sulfur binding region

External Links

ECOD PDB View: 8RQZ RCSB PDB: 8RQZ PDBe: 8RQZ

Downloads

Download Domain PDB Full PDB Structure

GlycerolGOL

Malonate ionMLI

Shown in the structure viewer.