ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e8rqzC3 - ECOD Domain | ECOD

ECOD/Domains/e8rqzC3

e8rqzC3

UID: 005342875

PDB

Range: C:304-389,582-807
PDB: 8RQZ chain C(all domains)

Molecule: Probable oxidoreductase YjgC

3D Structure

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Related Domains

Browse other domains in Molybdopterin →

Classification

AArchitecturea/b three-layered sandwiches(a.17)

XX-groupRossmann-like(2003)

HH-groupFormate dehydrogenase/DMSO reductase, domains 2 and 3(2003.2)

TT-groupFormate dehydrogenase/DMSO reductase, domains 2 and 3(2003.2.1)

FFamilyMolybdopterin(2003.2.1.1)

Ligands

in contact, ≤ 4 Å

MOLYBDENUM(IV) ION4MO
metal
Hydrosulfuric acidH2S
2-AMINO-5,6-DIMERCAPTO-7-METHYL-3,7,8A,9-TETRAHYDRO-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-4-ONE GUANOSINE DINUCLEOTIDEMGD

+ 3 additives (Glycerol, Malonate ion, Nitrate ion)

GlycerolGOL
Malonate ion

Pfam Families

PF00384Molybdopterin

Molybdopterin oxidoreductase

External Links

ECOD PDB View: 8RQZ RCSB PDB: 8RQZ PDBe: 8RQZ

Downloads

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Nitrate ionNO3

Shown in the structure viewer.