ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e9cyaA1 - ECOD Domain | ECOD

ECOD/Domains/e9cyaA1

e9cyaA1

UID: 005343213

PDB

Range: A:2-50,319-460
PDB: 9CYA chain A(all domains)

Molecule: D-ornithine/D-lysine decarboxylase

3D Structure

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Related Domains

Browse other domains in Orn_DAP_Arg_deC →

Classification

AArchitecturebeta barrels(a.1)

XX-groupcradle loop barrel(1)

HH-groupRIFT-related(1.1)

TT-groupAlanine racemase-C(1.1.7)

FFamilyOrn_DAP_Arg_deC(1.1.7.1)

Ligands

in contact, ≤ 4 Å

Sodium ionNA
metal
1,4-DIAMINOBUTANEPUT

+ 4 additives (Acetate ion, Dimethyl sulfoxide, 1,2-ETHANEDIOL, …)

Acetate ionACT
Dimethyl sulfoxideDMS
1,2-ETHANEDIOLEDO

Pfam Families

PF00278Orn_DAP_Arg_deC

Pyridoxal-dependent decarboxylase, C-terminal sheet domain

ClanCL0866ALR_C-like

External Links

ECOD PDB View: 9CYA RCSB PDB: 9CYA PDBe: 9CYA

Downloads

Download Domain PDB Full PDB Structure

4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACIDEPE

Shown in the structure viewer.