ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e9cyaA2 - ECOD Domain | ECOD

ECOD/Domains/e9cyaA2

e9cyaA2

UID: 005343214

PDB

Range: A:51-315
PDB: 9CYA chain A(all domains)

Molecule: D-ornithine/D-lysine decarboxylase

3D Structure

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Related Domains

Browse other domains in Orn_Arg_deC_N →

Classification

AArchitecturea/b barrels(a.16)

XX-groupTIM beta/alpha-barrel(2002)

HH-groupTIM barrels(2002.1)

TT-groupTIM barrels(2002.1.1)

FFamilyOrn_Arg_deC_N(2002.1.1.101)

Ligands

in contact, ≤ 4 Å

Chloride ionCL
Sodium ionNA
metal

+ 4 additives (Dimethyl sulfoxide, 1,2-ETHANEDIOL, 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, …)

Dimethyl sulfoxideDMS
1,2-ETHANEDIOLEDO
4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID

Pfam Families

PF02784Orn_Arg_deC_N

Pyridoxal-dependent decarboxylase, pyridoxal binding domain

ClanCL0036TIM_barrel

External Links

ECOD PDB View: 9CYA RCSB PDB: 9CYA PDBe: 9CYA

Downloads

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GlycerolGOL

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