ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e9q9pB1 - ECOD Domain | ECOD

ECOD/Domains/e9q9pB1

e9q9pB1

UID: 005344007

PDB

Range: B:8-177
PDB: 9Q9P chain B(all domains)

Molecule: E3 ubiquitin-protein ligase TRIM21

3D Structure

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Related Domains

Browse other domains in SPRY,PRY →

Classification

AArchitecturebeta sandwiches(a.3)

XX-groupjelly-roll(10)

HH-groupConcanavalin A-like(10.1)

TT-groupConcanavalin A-like lectins/glucanases(10.1.1)

FFamilySPRY,PRY(10.1.1.9)

Ligands

in contact, ≤ 4 Å

(2~{S},4~{S})-1-[(3~{S})-3-azanyl-3-(2-methoxyphenyl)propanoyl]-4-cyclohexyl-~{N}-[(2~{S})-1-(methylamino)-1-oxidanylidene-3-pyridin-4-yl-propan-2-yl]pyrrolidine-2-carboxamideA1I4X

Shown in the structure viewer.

Pfam Families

SPRY domain

ClanCL0004Concanavalin

SPRY-associated domain

ClanCL0004Concanavalin

External Links

ECOD PDB View: 9Q9P RCSB PDB: 9Q9P PDBe: 9Q9P

Downloads

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