ECODEvolutionary Classification of Protein Domains

Home Browse Search Download Help

About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

Quick Links

Browse Classification
Search
Download Data
Documentation
Privacy

Resources

Grishin Lab
UT Southwestern
RCSB PDB
AlphaFold DB
ecod.database@gmail.com

© 2014-2026 Grishin Lab / HHMI / UTSW

e3m5o.4 - ECOD Domain | ECOD

ECOD/Domains/e3m5o.4

e3m5o.4

UID: 005347363

PDB

Range: B:7-200,D:1-8
PDB: 3M5O chain mc(all domains)

3D Structure

Loading viewer...

Related Domains

Browse other domains in Peptidase_S29 →

Classification

AArchitecturebeta barrels(a.1)

XX-groupcradle loop barrel(1)

HH-groupRIFT-related(1.1)

TT-groupFMN-binding split barrel(1.1.5)

FFamilyPeptidase_S29(1.1.5.14)

Ligands

in contact, ≤ 4 Å

Zinc ionZN
metal

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF02907Peptidase_S29

Hepatitis C virus NS3 protease

ClanCL0124Peptidase_PA

External Links

ECOD PDB View: 3M5O RCSB PDB: 3M5O PDBe: 3M5O

Downloads

Download Domain PDB Full PDB Structure