ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e2d2cB1 - ECOD Domain | ECOD

ECOD/Domains/e2d2cB1

e2d2cB1

UID: 000053583

PDB

Range: B:18-154
PDB: 2D2C chain B(all domains)
UniProt: P83792 (all domains)
Gene: petD

Molecule: Cytochrome b6-f complex subunit 4

3D Structure

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Related Domains

Browse other domains in Cytochrom_B_C →

Classification

AArchitecturealpha bundles(a.7)

XX-groupa domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)(5068)

HH-groupa domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)(5068.1)

TT-groupa domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)(5068.1.1)

FFamilyCytochrom_B_C(5068.1.1.1)

Ligands

in contact, ≤ 4 Å

Beta caroteneBCR
drugDrugBank DB06755
DibromothymoquinoneBNT
drugDrugBank DB04646

Pfam Families

PF00032Cytochrom_B_C

Cytochrome b(C-terminal)/b6/petD

External Links

ECOD PDB View: 2D2C RCSB PDB: 2D2C PDBe: 2D2C UniProt: P83792

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

Chlorophyll A

drugDrugBank DB02133

Ferroheme CHEC

drugDrugBank DB03317

FerrohemeHEM

drugDrugBank DB18267within 5 Å only

(7R,17E)-4-HYDROXY-N,N,N,7-TETRAMETHYL-7-[(8E)-OCTADEC-8-ENOYLOXY]-10-OXO-3,5,9-TRIOXA-4-PHOSPHAHEPTACOS-17-EN-1-AMINIUM 4-OXIDEOPC

Shown in the structure viewer. Drug annotations from DrugDomain.