ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e1vioA1 - ECOD Domain | ECOD

ECOD/Domains/e1vioA1

e1vioA1

UID: 000005395

RepresentativePDB

Range: A:58-231
PDB: 1VIO chain A(all domains)
UniProt: P45124 (all domains)
Gene: rsuA

Molecule: Ribosomal small subunit pseudouridine synthase A

3D Structure

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Related Domains

Browse other domains in PseudoU_synth_2 →

Classification

AArchitecturea+b two layers(a.11)

XX-groupAlpha-beta plaits(304)

HH-groupPseudouridine synthase(304.102)

TT-groupPseudouridine synthase(304.102.1)

FFamilyPseudoU_synth_2(304.102.1.1)

Ligands

in contact, ≤ 4 Å

Only buffers and crystallization additives.

+ 1 additive (1,4-Butanediol)

1,4-ButanediolBU1
DrugBank DB01955

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF00849PseudoU_synth_2

RNA pseudouridylate synthase

ClanCL0649PseudoU_synth

External Links

ECOD PDB View: 1VIO RCSB PDB: 1VIO PDBe: 1VIO UniProt: P45124

Downloads

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