ECODEvolutionary Classification of Protein Domains

Home Browse Search Download Help

About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

Quick Links

Browse Classification
Search
Download Data
Documentation
Privacy

Resources

Grishin Lab
UT Southwestern
RCSB PDB
AlphaFold DB
ecod.database@gmail.com

© 2014-2026 Grishin Lab / HHMI / UTSW

e1q0dD1 - ECOD Domain | ECOD

ECOD/Domains/e1q0dD1

e1q0dD1

UID: 000054546

PDB

Range: D:1-117
PDB: 1Q0D chain D(all domains)
UniProt: P80734 (all domains)
Gene: sodN

Molecule: Superoxide dismutase [Ni]

3D Structure

Loading viewer...

Related Domains

Browse other domains in Sod_Ni →

Classification

AArchitecturealpha bundles(a.7)

XX-groupFour-helical up-and-down bundle(601)

HH-groupNickel-containing superoxide dismutase, NiSOD(601.12)

TT-groupNickel-containing superoxide dismutase, NiSOD(601.12.1)

FFamilySod_Ni(601.12.1.1)

Ligands

in contact, ≤ 4 Å

NICKEL (III) ION3NI
metal

+ 1 additive (Sulfate ion)

Sulfate ionSO4
DrugBank DB14546

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

Nickel-containing superoxide dismutase

External Links

ECOD PDB View: 1Q0D RCSB PDB: 1Q0D PDBe: 1Q0D UniProt: P80734

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure