ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e1yfdB1 - ECOD Domain | ECOD

ECOD/Domains/e1yfdB1

e1yfdB1

UID: 000056523

PDB

Range: B:1-339
PDB: 1YFD chain B(all domains)
UniProt: P69924 (all domains)
Gene: nrdB

Molecule: Ribonucleoside-diphosphate reductase 1 beta chain

3D Structure

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Related Domains

Browse other domains in Ribonuc_red_sm →

Classification

AArchitecturealpha bundles(a.7)

XX-groupFerritin/Heme oxygenase/4-helical cytokines(150)

HH-groupFerritin/Heme oxygenase(150.1)

TT-groupHeme oxygenase/Ribonucleotide reductase(150.1.2)

FFamilyRibonuc_red_sm(150.1.2.1)

Ligands

in contact, ≤ 4 Å

MERCURY (II) IONHG
metal

+ 1 additive (Mu-oxo-diiron)

Mu-oxo-diironFEO

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF00268Ribonuc_red_sm

Ribonucleotide reductase, small chain

ClanCL0044Ferritin

External Links

ECOD PDB View: 1YFD RCSB PDB: 1YFD PDBe: 1YFD UniProt: P69924

Downloads

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