ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e1em9B1 - ECOD Domain | ECOD

ECOD/Domains/e1em9B1

e1em9B1

UID: 000056910

PDB

Range: B:1-147
PDB: 1EM9 chain B(all domains)
UniProt: P03322 (all domains)
Gene: gag

Molecule: GAG POLYPROTEIN CAPSID PROTEIN P27

3D Structure

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Related Domains

Browse other domains in Gag_p24 →

Classification

AArchitecturealpha bundles(a.7)

XX-groupRetrovirus capsid protein(170)

HH-groupRetrovirus capsid protein N-terminal domain(170.2)

TT-groupRetrovirus capsid protein N-terminal domain(170.2.1)

FFamilyGag_p24(170.2.1.1)

Ligands

in contact, ≤ 4 Å

Magnesium ionMG
metal

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF00607Gag_p24

gag protein p24 N-terminal domain

ClanCL0148Viral_Gag

External Links

ECOD PDB View: 1EM9 RCSB PDB: 1EM9 PDBe: 1EM9 UniProt: P03322

Downloads

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