ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e2j45B1 - ECOD Domain | ECOD

ECOD/Domains/e2j45B1

e2j45B1

UID: 000057115

PDB

Range: B:1-88
PDB: 2J45 chain B(all domains)
UniProt: O07347 (all domains)
Gene: ffh

Molecule: SIGNAL RECOGNITION PARTICLE PROTEIN

3D Structure

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Related Domains

Browse other domains in SRP54_N →

Classification

AArchitecturealpha bundles(a.7)

XX-groupDomain of the SRP/SRP receptor G proteins-like(181)

HH-groupDomain of the SRP/SRP receptor G-proteins(181.1)

TT-groupDomain of the SRP/SRP receptor G-proteins(181.1.1)

FFamilySRP54_N(181.1.1.1)

Ligands

in contact, ≤ 4 Å

Calcium ionCA
metal
(4R)-2-METHYLPENTANE-2,4-DIOLMRD

+ 1 additive (1,2-ETHANEDIOL)

1,2-ETHANEDIOLEDO

Pfam Families

PF02881SRP54_N

SRP54-type protein, helical bundle domain

External Links

ECOD PDB View: 2J45 RCSB PDB: 2J45 PDBe: 2J45 UniProt: O07347

Downloads

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Shown in the structure viewer. Drug annotations from DrugDomain.