ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e1vrmA1 - ECOD Domain | ECOD

ECOD/Domains/e1vrmA1

e1vrmA1

UID: 000005761

RepresentativePDB

Range: A:44-231
PDB: 1VRM chain A(all domains)
UniProt: Q9X1N9 (all domains)
Gene: TM_1553

Molecule: hypothetical protein TM1553

3D Structure

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Related Domains

Browse other domains in ApbE →

Classification

AArchitecturea+b two layers(a.11)

XX-groupT-fold(230)

HH-groupApbE-like(230.4)

TT-groupApbE-like(230.4.1)

FFamilyApbE(230.4.1.1)

Ligands

in contact, ≤ 4 Å

(4R)-2-METHYLPENTANE-2,4-DIOLMRD
Unknown ligandUNL

+ 1 additive ((4r)-2-Methylpentane-2,4-Diol)

(4r)-2-Methylpentane-2,4-DiolMPD

Pfam Families

ApbE family

ClanCL0989ApbE

External Links

ECOD PDB View: 1VRM RCSB PDB: 1VRM PDBe: 1VRM UniProt: Q9X1N9

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

DrugBank DB03564

Shown in the structure viewer. Drug annotations from DrugDomain.