ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e1dv3R1 - ECOD Domain | ECOD

ECOD/Domains/e1dv3R1

e1dv3R1

UID: 000057940

PDB

Range: R:1-281
PDB: 1DV3 chain R(all domains)
UniProt: P0C0Y8 (all domains)
Gene: pufL

Molecule: PHOTOSYNTHETIC REACTION CENTER REACTION CENTER

3D Structure

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Related Domains

Browse other domains in Photo_RC →

Classification

AArchitecturealpha bundles(a.7)

XX-groupBacterial photosystem II reaction centre L and M subunits-like(5037)

HH-groupBacterial photosystem II reaction centre L and M subunits-like(5037.1)

TT-groupBacterial photosystem II reaction centre L and M subunits-like(5037.1.1)

FFamilyPhoto_RC(5037.1.1.1)

Ligands

in contact, ≤ 4 Å

Bacteriochlorophyll ABCL
drugDrugBank DB01853
UbidecarenoneU10
drugDrugBank DB09270
Bacteriopheophytin a

Pfam Families

PF00124Photo_RC

Photosynthetic reaction centre protein

External Links

ECOD PDB View: 1DV3 RCSB PDB: 1DV3 PDBe: 1DV3 UniProt: P0C0Y8

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

Chloride ionCL

FE (II) IONFE2

metal

Shown in the structure viewer. Drug annotations from DrugDomain.