ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e1qovM1 - ECOD Domain | ECOD

ECOD/Domains/e1qovM1

e1qovM1

UID: 000058069

PDB

Range: M:1-302
PDB: 1QOV chain M(all domains)
UniProt: P0C0Y9 (all domains)
Gene: pufM

Molecule: PHOTOSYNTHETIC REACTION CENTER

3D Structure

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Related Domains

Browse other domains in Photo_RC →

Classification

AArchitecturealpha bundles(a.7)

XX-groupBacterial photosystem II reaction centre L and M subunits-like(5037)

HH-groupBacterial photosystem II reaction centre L and M subunits-like(5037.1)

TT-groupBacterial photosystem II reaction centre L and M subunits-like(5037.1.1)

FFamilyPhoto_RC(5037.1.1.1)

Ligands

in contact, ≤ 4 Å

Bacteriochlorophyll ABCL
drugDrugBank DB01853
Tetrastearoyl cardiolipinCDL
drugDrugBank DB03429

Pfam Families

PF00124Photo_RC

Photosynthetic reaction centre protein

External Links

ECOD PDB View: 1QOV RCSB PDB: 1QOV PDBe: 1QOV UniProt: P0C0Y9

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

Ubidecarenone

drugDrugBank DB09270

Bacteriopheophytin aBPH

Chloride ionCL

FE (II) IONFE2

metal

SperoidenoneSPN

Shown in the structure viewer. Drug annotations from DrugDomain.