ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e1r2cM1 - ECOD Domain | ECOD

ECOD/Domains/e1r2cM1

e1r2cM1

UID: 000058083

PDB

Range: M:1-301
PDB: 1R2C chain M(all domains)
UniProt: P06010 (all domains)
Gene: pufM

Molecule: Reaction center protein M chain

3D Structure

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Related Domains

Browse other domains in Photo_RC →

Classification

AArchitecturealpha bundles(a.7)

XX-groupBacterial photosystem II reaction centre L and M subunits-like(5037)

HH-groupBacterial photosystem II reaction centre L and M subunits-like(5037.1)

TT-groupBacterial photosystem II reaction centre L and M subunits-like(5037.1.1)

FFamilyPhoto_RC(5037.1.1.1)

Ligands

in contact, ≤ 4 Å

Menaquinone 7MQ7
drugDrugBank DB13075
Ubiquinone Q2UQ2
drugDrugBank DB08690within 5 Å only

Pfam Families

PF00124Photo_RC

Photosynthetic reaction centre protein

External Links

ECOD PDB View: 1R2C RCSB PDB: 1R2C PDBe: 1R2C UniProt: P06010

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

Bacteriochlorophyll b

Bacteriopheophytin bBPB

FE (II) IONFE2

metal

Protoporphyrin ix containing feHEM

15-cis-1,2-dihydroneurosporeneNS5

+ 2 additives (Dodecyldimethylamine N-oxide, Sulfate ion)

Dodecyldimethylamine N-oxideLDA
DrugBank DB04147
Sulfate ionSO4
DrugBank DB14546

Shown in the structure viewer. Drug annotations from DrugDomain.