ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e2d2cN1 - ECOD Domain | ECOD

ECOD/Domains/e2d2cN1

e2d2cN1

UID: 000058207

PDB

Range: N:13-214
PDB: 2D2C chain N(all domains)
UniProt: P83791 (all domains)
Gene: petB

Molecule: Cytochrome b6

3D Structure

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Related Domains

Browse other domains in Cytochrome_B →

Classification

AArchitecturealpha bundles(a.7)

XX-groupTransmembrane heme-binding four-helical bundle(5069)

HH-groupTransmembrane heme-binding four-helical bundle(5069.1)

TT-groupTransmembrane di-heme cytochromes(5069.1.1)

FFamilyCytochrome_B(5069.1.1.1)

Ligands

in contact, ≤ 4 Å

Beta caroteneBCR
drugDrugBank DB06755
DibromothymoquinoneBNT
drugDrugBank DB04646

Pfam Families

PF00033Cytochrome_B

Cytochrome b/b6/petB

ClanCL03282heme_cytochrom

External Links

ECOD PDB View: 2D2C RCSB PDB: 2D2C PDBe: 2D2C UniProt: P83791

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

Chlorophyll A

drugDrugBank DB02133

Ferroheme CHEC

drugDrugBank DB03317

FerrohemeHEM

drugDrugBank DB18267within 5 Å only

(7R,17E)-4-HYDROXY-N,N,N,7-TETRAMETHYL-7-[(8E)-OCTADEC-8-ENOYLOXY]-10-OXO-3,5,9-TRIOXA-4-PHOSPHAHEPTACOS-17-EN-1-AMINIUM 4-OXIDEOPC

Shown in the structure viewer. Drug annotations from DrugDomain.