ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e1pdaA1 - ECOD Domain | ECOD

ECOD/Domains/e1pdaA1

e1pdaA1

UID: 000005825

RepresentativePDB

Range: A:220-307
PDB: 1PDA chain A(all domains)
UniProt: P06983 (all domains)
Gene: hemC

Molecule: PORPHOBILINOGEN DEAMINASE

3D Structure

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Related Domains

Browse other domains in Porphobil_deamC →

Classification

AArchitecturea+b two layers(a.11)

XX-groupdsRBD-like(330)

HH-groupPorphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain(330.4)

TT-groupPorphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain(330.4.1)

FFamilyPorphobil_deamC(330.4.1.1)

Ligands

in contact, ≤ 4 Å

Dipyrromethane CofactorDPM
drugDrugBank DB04517

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF03900Porphobil_deamC

Porphobilinogen deaminase, C-terminal domain

External Links

ECOD PDB View: 1PDA RCSB PDB: 1PDA PDBe: 1PDA UniProt: P06983

Downloads

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