ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e2gkpA1 - ECOD Domain | ECOD

ECOD/Domains/e2gkpA1

e2gkpA1

UID: 000005833

RepresentativePDB

Range: A:1-164
PDB: 2GKP chain A(all domains)
UniProt: Q9K0T5 (all domains)
Gene: NMB0488

Molecule: hypothetical protein NMB0488

3D Structure

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Related Domains

Browse other domains in CdiI →

Classification

AArchitecturea+b two layers(a.11)

XX-groupNMB0488-like(4269)

HH-groupNMB0488-like(4269.1)

TT-groupNMB0488-like(4269.1.1)

FFamilyCdiI(4269.1.1.1)

Ligands

in contact, ≤ 4 Å

MercaptoethanolBME
drugDrugBank DB03345
Sodium ionNA
metal

+ 1 additive (1,2-ETHANEDIOL)

1,2-ETHANEDIOLEDO

Pfam Families

CDI immunity protein

External Links

ECOD PDB View: 2GKP RCSB PDB: 2GKP PDBe: 2GKP UniProt: Q9K0T5

Downloads

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Shown in the structure viewer. Drug annotations from DrugDomain.