ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e2idbA2 - ECOD Domain | ECOD

ECOD/Domains/e2idbA2

e2idbA2

UID: 000005940

RepresentativePDB

Range: A:326-491
PDB: 2IDB chain A(all domains)
UniProt: P0AAB4 (all domains)
Gene: ubiD

Molecule: 3-octaprenyl-4-hydroxybenzoate carboxy-lyase

3D Structure

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Related Domains

Browse other domains in UbiD_C →

Classification

AArchitecturea+b two layers(a.11)

XX-groupAlpha-lytic protease prodomain-like(327)

HH-groupUbiD C-terminal domain-like(327.12)

TT-groupUbiD C-terminal domain-like(327.12.1)

FFamilyUbiD_C(327.12.1.1)

Ligands

in contact, ≤ 4 Å

Only buffers and crystallization additives.

+ 2 additives (Pentaethylene glycol, 1,2-ETHANEDIOL)

Pentaethylene glycol1PE
1,2-ETHANEDIOLEDO

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

3-octaprenyl-4-hydroxybenzoate carboxy-lyase C-terminal domain

External Links

ECOD PDB View: 2IDB RCSB PDB: 2IDB PDBe: 2IDB UniProt: P0AAB4

Downloads

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