ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e1tnoD1 - ECOD Domain | ECOD

ECOD/Domains/e1tnoD1

e1tnoD1

UID: 000059406

PDB

Range: D:18-363
PDB: 1TNO chain D(all domains)
UniProt: P53610 (all domains)
Gene: Pggt1b

Molecule: Geranylgeranyl transferase type I beta subunit

3D Structure

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Related Domains

Browse other domains in Prenyltrans →

Classification

AArchitecturealpha superhelices(a.9)

XX-groupRepetitive alpha hairpins(109)

HH-groupalpha/alpha toroid(109.2)

TT-groupalpha/alpha toroid(109.2.1)

FFamilyPrenyltrans(109.2.1.1)

Ligands

in contact, ≤ 4 Å

2-[METHYL-(5-GERANYL-4-METHYL-PENT-3-ENYL)-AMINO]-ETHYL-DIPHOSPHATEMGM
drugDrugBank DB08180
Chloride ionCL
Zinc ionZN

Pfam Families

PF00432Prenyltrans

Prenyltransferase alpha-alpha toroid domain

ClanCL00596_Hairpin

External Links

ECOD PDB View: 1TNO RCSB PDB: 1TNO PDBe: 1TNO UniProt: P53610

Downloads

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metal

Shown in the structure viewer. Drug annotations from DrugDomain.