ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e1ni1B1 - ECOD Domain | ECOD

ECOD/Domains/e1ni1B1

e1ni1B1

UID: 000059474

PDB

Range: B:23-421
PDB: 1NI1 chain B(all domains)
UniProt: Q02293 (all domains)
Gene: Fntb

Molecule: Protein farnesyltransferase beta subunit

3D Structure

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Related Domains

Browse other domains in Prenyltrans →

Classification

AArchitecturealpha superhelices(a.9)

XX-groupRepetitive alpha hairpins(109)

HH-groupalpha/alpha toroid(109.2)

TT-groupalpha/alpha toroid(109.2.1)

FFamilyPrenyltrans(109.2.1.1)

Ligands

in contact, ≤ 4 Å

2-CHLORO-5-(3-CHLORO-PHENYL)-6-[(4-CYANO-PHENYL)-(3-METHYL-3H-IMIDAZOL-4-YL)- METHOXYMETHYL]-NICOTINONITRILE2C5
drugDrugBank DB06953
ALPHA-HYDROXYFARNESYLPHOSPHONIC ACIDHFP
drug

Pfam Families

PF00432Prenyltrans

Prenyltransferase alpha-alpha toroid domain

ClanCL00596_Hairpin

External Links

ECOD PDB View: 1NI1 RCSB PDB: 1NI1 PDBe: 1NI1 UniProt: Q02293

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

DrugBank DB07895

Zinc ionZN

metal

Shown in the structure viewer. Drug annotations from DrugDomain.