ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e1vd5A1 - ECOD Domain | ECOD

ECOD/Domains/e1vd5A1

e1vd5A1

UID: 000059580

PDB

Range: A:1-377
PDB: 1VD5 chain A(all domains)
UniProt: Q9RC92 (all domains)
Gene: ugl

Molecule: unsaturated glucuronyl hydrolase

3D Structure

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Related Domains

Browse other domains in Glyco_hydro_88 →

Classification

AArchitecturealpha superhelices(a.9)

XX-groupRepetitive alpha hairpins(109)

HH-groupalpha/alpha toroid(109.2)

TT-groupalpha/alpha toroid(109.2.1)

FFamilyGlyco_hydro_88(109.2.1.23)

Ligands

in contact, ≤ 4 Å

1,4-DithiothreitolDTT
drugDrugBank DB04447
GlycineGLY
drugDrugBank DB00145

+ 1 additive ((4r)-2-Methylpentane-2,4-Diol)

Pfam Families

PF07470Glyco_hydro_88

Glycosyl Hydrolase Family 88

ClanCL00596_Hairpin

External Links

ECOD PDB View: 1VD5 RCSB PDB: 1VD5 PDBe: 1VD5 UniProt: Q9RC92

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

(4r)-2-Methylpentane-2,4-DiolMPD
DrugBank DB03564

Shown in the structure viewer. Drug annotations from DrugDomain.