ECODEvolutionary Classification of Protein Domains

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About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e2hkjA2 - ECOD Domain | ECOD

ECOD/Domains/e2hkjA2

e2hkjA2

UID: 000006012

RepresentativePDB

Range: A:307-470
PDB: 2HKJ chain A(all domains)
UniProt: O05207 (all domains)
Gene: top6B

Molecule: Type II DNA topoisomerase VI subunit B

3D Structure

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Related Domains

Browse other domains in Topo-VIb_trans →

Classification

AArchitecturea+b two layers(a.11)

XX-groupRibosomal protein S5 domain 2-like(212)

HH-groupRibosomal protein S5 domain 2-like(212.1)

TT-groupRibosomal protein S5 domain 2-like(212.1.1)

FFamilyTopo-VIb_trans(212.1.1.22)

Ligands

in contact, ≤ 4 Å

Only buffers and crystallization additives.

+ 1 additive (Dimethyl sulfoxide)

Dimethyl sulfoxideDMS
DrugBank DB01093

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF09239Topo-VIb_trans

Topoisomerase VI B subunit, transducer

ClanCL0329S5

External Links

ECOD PDB View: 2HKJ RCSB PDB: 2HKJ PDBe: 2HKJ UniProt: O05207

Downloads

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