ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e2dyrN1 - ECOD Domain | ECOD

ECOD/Domains/e2dyrN1

e2dyrN1

UID: 000060178

PDB

Range: N:1-514
PDB: 2DYR chain N(all domains)
UniProt: P00396 (all domains)
Gene: MT-CO1

Molecule: Cytochrome c oxidase subunit 1

3D Structure

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Related Domains

Browse other domains in COX1 →

Classification

AArchitecturealpha superhelices(a.9)

XX-groupCytochrome c oxidase subunit I-like(5038)

HH-groupCytochrome c oxidase subunit I-like(5038.1)

TT-groupCytochrome c oxidase subunit I-like(5038.1.1)

FFamilyCOX1(5038.1.1.1)

Ligands

in contact, ≤ 4 Å

Tetrastearoyl cardiolipinCDL
drugDrugBank DB03429
Cholic AcidCHD
drugDrugBank DB02659
COPPER (II) ION

Pfam Families

Cytochrome C and Quinol oxidase polypeptide I

ClanCL0714COX1-like

External Links

ECOD PDB View: 2DYR RCSB PDB: 2DYR PDBe: 2DYR UniProt: P00396

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

metal

Decyl-beta-d-maltopyranosideDMU

Heme-aHEA

Magnesium ionMG

metal

Sodium ionNA

metal

(1S)-2-{[(2-AMINOETHOXY)(HYDROXY)PHOSPHORYL]OXY}-1-[(STEAROYLOXY)METHYL]ETHYL (5E,8E,11E,14E)-ICOSA-5,8,11,14-TETRAENOATEPEK

(1R)-2-{[{[(2S)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL (11E)-OCTADEC-11-ENOATEPGV

(7R,17E,20E)-4-HYDROXY-N,N,N-TRIMETHYL-9-OXO-7-[(PALMITOYLOXY)METHYL]-3,5,8-TRIOXA-4-PHOSPHAHEXACOSA-17,20-DIEN-1-AMINIUM 4-OXIDEPSC

TristearoylglycerolTGL

Shown in the structure viewer. Drug annotations from DrugDomain.