ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e2f5tX1 - ECOD Domain | ECOD

ECOD/Domains/e2f5tX1

e2f5tX1

UID: 000000607

RepresentativePDB

Range: X:247-338
PDB: 2F5T chain X(all domains)
UniProt: Q7LYW4 (all domains)
Gene: trmB

Molecule: archaeal transcriptional regulator TrmB

3D Structure

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Related Domains

Browse other domains in TrmB-TrmBL1_EBD_C →

Classification

AArchitecturebeta barrels(a.1)

XX-groupSH3(4)

HH-groupTrmB C-terminal domain-like(4.15)

TT-groupTrmB C-terminal domain-like(4.15.1)

FFamilyTrmB-TrmBL1_EBD_C(4.15.1.2)

Ligands

in contact, ≤ 4 Å

Only buffers and crystallization additives.

+ 1 additive (Imidazole)

ImidazoleIMD
DrugBank DB03366

Shown in the structure viewer. Drug annotations from DrugDomain.

Pfam Families

PF31112TrmB-TrmBL1_EBD_C

TrmB/TrmBL1, EBD C-terminal subdomain

External Links

ECOD PDB View: 2F5T RCSB PDB: 2F5T PDBe: 2F5T UniProt: Q7LYW4

Downloads

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