ECODEvolutionary Classification of Protein Domains

Home Browse Search Download Help

About ECOD

ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

Quick Links

Browse Classification
Search
Download Data
Documentation
Privacy

Resources

Grishin Lab
UT Southwestern
RCSB PDB
AlphaFold DB
ecod.database@gmail.com

© 2014-2026 Grishin Lab / HHMI / UTSW

e1nkzC1 - ECOD Domain | ECOD

ECOD/Domains/e1nkzC1

e1nkzC1

UID: 000061270

PDB

Range: C:1-53
PDB: 1NKZ chain C(all domains)
UniProt: P26789 (all domains)

Molecule: Light-harvesting protein B-800/850, alpha chain

3D Structure

Loading viewer...

Related Domains

Browse other domains in LHC →

Classification

AArchitectureextended segments(a.20)

XX-groupBacterial light-harvesting complex subunits(5074)

HH-groupBacterial light-harvesting complex subunits(5074.1)

TT-groupBacterial light-harvesting complex subunits(5074.1.1)

FFamilyLHC(5074.1.1.1)

Ligands

in contact, ≤ 4 Å

Bacteriochlorophyll ABCL
drugDrugBank DB01853
BenzamidineBEN
Rhodopin b-D-glucosideRG1

Pfam Families

Antenna complex alpha/beta subunit

External Links

ECOD PDB View: 1NKZ RCSB PDB: 1NKZ PDBe: 1NKZ UniProt: P26789

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

+ 1 additive (octyl beta-D-glucopyranoside)

octyl beta-D-glucopyranosideBOG

Shown in the structure viewer. Drug annotations from DrugDomain.