ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e1nkzE1 - ECOD Domain | ECOD

ECOD/Domains/e1nkzE1

e1nkzE1

UID: 000061283

PDB

Range: E:1-53
PDB: 1NKZ chain E(all domains)
UniProt: P26789 (all domains)

Molecule: Light-harvesting protein B-800/850, alpha chain

3D Structure

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Related Domains

Browse other domains in LHC →

Classification

AArchitectureextended segments(a.20)

XX-groupBacterial light-harvesting complex subunits(5074)

HH-groupBacterial light-harvesting complex subunits(5074.1)

TT-groupBacterial light-harvesting complex subunits(5074.1.1)

FFamilyLHC(5074.1.1.1)

Ligands

in contact, ≤ 4 Å

Bacteriochlorophyll ABCL
drugDrugBank DB01853
BenzamidineBEN
Rhodopin b-D-glucosideRG1

Pfam Families

Antenna complex alpha/beta subunit

External Links

ECOD PDB View: 1NKZ RCSB PDB: 1NKZ PDBe: 1NKZ UniProt: P26789

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

+ 1 additive (octyl beta-D-glucopyranoside)

octyl beta-D-glucopyranosideBOG

Shown in the structure viewer. Drug annotations from DrugDomain.