ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e1y2dB1 - ECOD Domain | ECOD

ECOD/Domains/e1y2dB1

e1y2dB1

UID: 000061367

PDB

Range: B:86-411
PDB: 1Y2D chain B(all domains)
UniProt: Q08499 (all domains)
Gene: PDE4D

Molecule: cAMP-specific 3',5'-cyclic phosphodiesterase 4D

3D Structure

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Related Domains

Browse other domains in PDEase_I →

Classification

AArchitecturealpha complex topology(a.10)

XX-groupPDEase-like(131)

HH-groupHD-domain/PDEase-like(131.1)

TT-groupHD-domain/PDEase-like(131.1.1)

FFamilyPDEase_I(131.1.1.1)

Ligands

in contact, ≤ 4 Å

1-(4-Methoxyphenyl)-3,5-Dimethyl-1h-Pyrazole-4-Carboxylic Acid Ethyl Ester4DE
drugDrugBank DB04469
2-[3-(2-Hydroxy-1,1-Dihydroxymethyl-Ethylamino)-Propylamino]-2-Hydroxymethyl-Propane-1,3-DiolB3P

Pfam Families

PF00233PDEase_I

3'5'-cyclic nucleotide phosphodiesterase

ClanCL0237HD_PDEase

External Links

ECOD PDB View: 1Y2D RCSB PDB: 1Y2D PDBe: 1Y2D UniProt: Q08499

Downloads

Download Domain PDB Download Domain FASTA Full PDB Structure

drug

DrugBank DB02676

Magnesium ionMG

metal

Zinc ionZN

metal

+ 1 additive (1,2-ETHANEDIOL)

1,2-ETHANEDIOLEDO

Shown in the structure viewer. Drug annotations from DrugDomain.