ECODEvolutionary Classification of Protein Domains

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ECOD (Evolutionary Classification of Protein Domains) is a hierarchical classification of protein domains based on evolutionary relationships. It combines automated sequence and structure analysis with manual curation.

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e1z6fA2 - ECOD Domain | ECOD

ECOD/Domains/e1z6fA2

e1z6fA2

UID: 000062612

PDB

Range: A:40-158
PDB: 1Z6F chain A(all domains)
UniProt: P0AEB2 (all domains)
Gene: dacA

Molecule: Penicillin-binding protein 5

3D Structure

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Related Domains

Browse other domains in Peptidase_S11 →

Classification

AArchitecturealpha complex topology(a.10)

XX-groupalpha-helical domain in beta-lactamase/transpeptidase-like proteins(4019)

HH-groupalpha-helical domain in beta-lactamase/transpeptidase-like proteins(4019.1)

TT-groupalpha-helical domain in beta-lactamase/transpeptidase-like proteins(4019.1.1)

FFamilyPeptidase_S11(4019.1.1.2)

Ligands

in contact, ≤ 4 Å

BOC-GAMMA-D-GLU-L-LYS(CBZ)-D-BOROALABO9
drugDrugBank DB04647

+ 1 additive (Glycerin)

GlycerinGOL
DrugBank DB09462

Pfam Families

PF00768Peptidase_S11

D-alanyl-D-alanine carboxypeptidase

ClanCL0013Beta-lactamase

External Links

ECOD PDB View: 1Z6F RCSB PDB: 1Z6F PDBe: 1Z6F UniProt: P0AEB2

Downloads

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Shown in the structure viewer. Drug annotations from DrugDomain.